Protein ZmHMG8
ZmHMG8 is a protein in the HMG family.
Information
Coreg Name: ZmHMG8
Species: Maize
Coreg Family: HMG
Gene Name(Synonym): HMG1
Uniprot ID: A0A1D6PDQ1

Protein ZmHMG8

ZmHMG8 is a protein in the HMG family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
PF00505PF09011
Zm00001eb228620_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d014858DAPseq no logo sequence fimo position
Zm00001d014858DAPseq no logo sequence fimo position
Zm00001d014858ChIPseq no logo sequence fimo position
Zm00001d014858PChIPseq no logo sequence fimo position

Interactions where ZmHMG8 is the regulator  
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There are 19809 protein-dna interactions that fit this criteria. download excel sheet

Interactions where ZmHMG8 is the target  
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There are 170 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb228620_T001 from maize genome v5

Amino Acid Sequence
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MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCLL
HIFSLDKIPINPGYIACSCIKQVAKFIFDHNVDLVVLYWIPSMQNICRFAYATLFCKSSI

MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCLL
HIFSLDKIPINPGYIACSCIKQVAKFIFDHNVDLVVLYWIPSMQNICRFAYATLFCKSSI

MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCLL
HIFSLDKIPINPGYIACSCIKQVAKFIFDHNVDLVVLYWIPSMQNICRFAYATLFCKSSI

MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCLL
HIFSLDKIPINPGYIACSCIKQVAKFIFDHNVDLVVLYWIPSMQNICRFAYATLFCKSSI

MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCLL
HIFSLDKIPINPGYIACSCIKQVAKFIFDHNVDLVVLYWIPSMQNICRFAYATLFCKSSI

MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCLL
HIFSLDKIPINPGYIACSCIKQVAKFIFDHNVDLVVLYWIPSMQNICRFAYATLFCKSSI

MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCLL
HIFSLDKIPINPGYIACSCIKQVAKFIFDHNVDLVVLYWIPSMQNICRFAYATLFCKSSI

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF09011
PF00505
PF00505
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Nucleotide Sequence
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CAGAATCGCTGATATGCCCTTGGGC...

GRMZM5G834758_T01 from maize genome v3

Amino Acid Sequence
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MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESIVGQGSLCSQG

Nucleotide Sequence
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GGGTGCGGGCCCTCGCTGCGCGGGC...

GRMZM5G834758_T02 from maize genome v3


Related TFome: pUT5351

Amino Acid Sequence
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MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEDEDDDE

Nucleotide Sequence
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GGGTGCGGGCCCTCGCTGCGCGGGC...

GRMZM5G834758_T03 from maize genome v3

Amino Acid Sequence
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MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEVYKIYSCLL
HIFSLDKIPINPGYIACSCIKQVAKFIFDHNVDLVVLYWIPSMQNICRFAYATLFCKSSI

Nucleotide Sequence
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GGGTGCGGGCCCTCGCTGCGCGGGC...

Zm00001d014858_T001 from maize genome v4

Amino Acid Sequence
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MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRW
KSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEEDEDDDE

Nucleotide Sequence
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CCCGCGGGACAGTGGGCAATGTGCC...

Zm00001d014858_T002 from maize genome v4

Amino Acid Sequence
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MKRSLTSPSRRSMTRMMKRVVRRMKMMTSDGAPRDNGPCFIQQWSGYTRPRGDHKKGAYIHVLELFSFTPHRDVLFLLLS
CYNG

Nucleotide Sequence
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AGCGCCCGTCGCCTCCCTTTCCCCT...

Zm00001d014858_T003 from maize genome v4

Amino Acid Sequence
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MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSK
SEVNDEDDEEGSEEDEDDDE

Nucleotide Sequence
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GCAGCGCCCGTCGCCTCCCTTTCCC...

Zm00001d014858_T004 from maize genome v4

Amino Acid Sequence
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MKRSLTSPSRRSMTRMMKRVVRRMKMMTSDGAPRDNGPCFIQQWSGYTRPRGDHKKGAYIHVLELFSFTPHRDVLFLLLS
CYNG

Nucleotide Sequence
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GCAGCGCCCGTCGCCTCCCTTTCCC...


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